PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943958.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 336aa    MW: 37422.6 Da    PI: 6.5013
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943958.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.11.1e-11120143326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      ++C++f+r+G C++Gd C FaHg
  XP_010943958.1 120 GAICPDFRRSGACPRGDACEFAHG 143
                     579********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.9E-7116147IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6117144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.173118145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-8121145IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9121143IPR000571Zinc finger, CCCH-type
SMARTSM0035616153176IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258153177IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MHAFSTEKQQ LLYYGRNPLL DLDVPPRKIL HRPGLTIYVP DDDQDQEPKF NEEGKEIDGE  60
EEGEEEEEEV DTYSCDEFRM YEFKVRRCMR GRSHDWTDCP FAHPGEKARR RDPRRYHYSG  120
AICPDFRRSG ACPRGDACEF AHGVFECWLH PARYRTMPCK DGRRCRRKVC FFAHSPRQLR  180
RLPSPASATT PIPSPRLPHK HSCCAGWPVA SSPTSPLTGF SSPISSPISP SGGAFQLSSH  240
TGNNKNKNSS GGGCKGHGWL FSSGVMGYDS VLYEEVMSSL EAMELSGDAA AASGIKGNGC  300
RSSSSFGPIE ERDFAEQQSS SNSGGPDLEW VNELLM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943958.10.0PREDICTED: zinc finger CCCH domain-containing protein 2-like
TrEMBLM0SU986e-83M0SU98_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P33360_0012e-82(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.14e-64C3H family protein